PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010914
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 177aa    MW: 20260.1 Da    PI: 10.3172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010914genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19111161256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Cla010914 111 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 161
                59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.66E-17110170No hitNo description
SMARTSM003801.4E-33111174IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-23111168IPR016177DNA-binding domain
PROSITE profilePS5103223.301111168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-31111169IPR001471AP2/ERF domain
PfamPF008471.2E-13112161IPR001471AP2/ERF domain
PRINTSPR003671.6E-10112123IPR001471AP2/ERF domain
PRINTSPR003671.6E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDNKMQQELN SPHLISNSKS LTDIRTLLSN LILSRQSTNT LDSIFSHCLP STAAPLPEPA  60
LGSSVYLRQR DLVHQFCVEN HHACSSANLH HHPLGISPGY GGFPATVKKK LYRGVRQRHW  120
GKWVAEIRLP QNRMRVWLGT YDTAEAAAYA YDRAAYKLRG EYARLNFPNL KDFFRRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A9e-21107168163ATERF1
2gcc_A9e-21107168163ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-179LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-179LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451936.18e-96PREDICTED: ethylene-responsive transcription factor ERF061
SwissprotQ9C7W22e-42ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A0D2SCX01e-50A0A0D2SCX0_G
TrEMBLA0A067JN592e-50A0A067JN59_JATCU; Uncharacterized protein
STRINGPOPTR_0001s10540.13e-47(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.11e-41ERF family protein